Hi Thomas,
Joel gave some pointers using the menus. But the reason for giving
spheres and mentioning that as a generic way is that spheres will work
for connected as well as non-bonded atoms. In the case of sulphate you
probably want to have a stick representation. The hydrogen bonds can
be drawn
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From: Jhon Thomas [mailto:jhon1.tho...@gmail.com]
Sent: Friday, 27 March 2009 8:20 p.m.
To: Joel Tyndall
Subject: Re: [PyMOL] depiction of ligands
Hi joel
Thanks for your reply...
I want to show my ligand
Hi there,
There are many ways to do this. You can also try Action>preset>ligands. This
will show the ligands (hetatms) and their interactions. Unfortunately this
doesn't highlight metal ions everytime (unless it interacts with the ligands).
You can usually view this using the sequence option. [
Hi Thomas,
You're not really specific here, so I'll give the most general reply:
show spheres, hetatm
By the way, these compounds will definitely be drawn either as sticks
or as nonbonded upon loading of the structure. You may not easily see
them, but if they're in the file, they'll be drawn.
