If you are more comfortable with PyMOL commands, use a .pml file (somewhat
like the gnuplot script you mentioned).
If you prefer Python, use a .py file, and import the necessary modules
(pymol, cmd from pymol, etc.). You can find working Python scripts that
call pymol in many places.
To color
Great, thank you.
On Mon, Sep 12, 2011 at 10:05 AM, Thomas Holder <
spel...@users.sourceforge.net> wrote:
> Hi Yotam,
>
>
> I'm sorry but this is too complected. Currently, I can't afford the time
>> to learn another scripting languish. Consider gnuplot script files, which
>> are simply a list
Hi Yotam,
> I'm sorry but this is too complected. Currently, I can't afford the time
> to learn another scripting languish. Consider gnuplot script files,
> which are simply a list of gnuplot commands.
PyMOL understands two languages. The "PyMOL language" is indeed similar
to gnuplot commands
Thanks.
I'm sorry but this is too complected. Currently, I can't afford the time to
learn another scripting languish. Consider gnuplot script files, which are
simply a list of gnuplot commands. Sure you can do some sophisticated stuff
but you don't have to. All my files will be simple atom list i
Well, not hard.
I made a script that can rotate a molecule around a line.
And I made a large tutorial to take one through the available functions of
this script.
It is a pymol command file, ".pml".
Check out:
http://www.pymolwiki.org/index.php/Rotkit
Troels Emtekær Linnet
Karl-Liebknecht-Straße
