Re: [PyMOL] Super, algorithm

Hi Spencer, If you are interested I have implemented a (preliminary version) of a superposition algorithm (similar to super) using Python/PyMOL. Cheers, Osvaldo. On Wed, Nov 26, 2014 at 2:40 PM, Sampson, Jared wrote: > Hi Spencer - > > If you need a superposition algorithm with a published

Re: [PyMOL] Super, algorithm

Hi Spencer - If you need a superposition algorithm with a published reference, try CEAlign. Some references are listed on the page for the former CEAlign Plugin from before it was incorp

Re: [PyMOL] Super, algorithm

Hi Spencer, unfortunately, to our knowledge, no formal documentation for the "super" align method exists. It's a "sequence-independant" (means: residue name independent) sequence alignment method based on 3D coordinates of CA atoms. The RMSD minimizing superposition with outlier rejection is id

Re: [PyMOL] Super, algorithm

I would also be interested if there is any documentation about the super algorithm and the differences to align. -Spencer On Fri, Nov 14, 2014 at 10:25 PM, Osvaldo Martin wrote: > Hi, > > Exactly which algorithm is behind the super command? How the outliers > pairs are defined? The is some sci