Re: [PyMOL] Scenes

2020-05-12 Thread Jared Sampson
Hi Tim -  One way to do this would be to duplicate the object before mutating and keep an "old" and "new" version as separate objects in the session.  Then you can enable one or the other as you like in your scenes. Hope that helps, Cheers, Jared From: Waybright, Timothy (NIH/NCI) [C] via Py

Re: [PyMOL] scenes and atom-wise colors

2013-06-06 Thread Robert Hanson
[responding to Folmer Fredslund, private message] Thanks, Folmer. What I was missing was the difference between color colorName, selection and set xxx_color, colorName and set xxx_color, colorName, selection Each of which does something totally different internally in PyMOL. I see now

Re: [PyMOL] scenes and states

2013-06-03 Thread Thomas Holder
Hi Bob, it's the object-level "state" setting: fetch 1nmr 1d7q, async=0 set state, 3, 1nmr set state, 10, 1d7q And since scenes do not store settings, this cannot be stored with a scene. Cheers, Thomas On Jun 3, 2013, at 10:41 AM, Robert Hanson wrote: > [[sorry -- not used to a list that r

Re: [PyMOL] scenes and states

2013-06-03 Thread Robert Hanson
[[sorry -- not used to a list that requires "reply-all" to go back to the list]] What you describe there is a way to load a specific file into a specific state, I think. I meant, once you have a set of multi-state objects, can I select to compare two different states, one from one and one from th

Re: [PyMOL] scenes and states

2013-06-03 Thread Tsjerk Wassenaar
Hi Bob, The answer is yes to all. fetch 1ubq, state=3 fetch 6lzm, state=10 cmd.load_cgo([7.0,0,0,0,2],name="sphere",state=2) The representations (e.g. surface) do have states in the sense that the each state gives a different surface. But whether the surface is shown or not is controlled globall

Re: [PyMOL] scenes and animate versus frames mdo

2008-02-21 Thread DeLano Scientific
Richard, It is fair to say that scenes and mdo commands are effectively distinct through the PyMOL 1.0x releases. One can either program movies manually (via mdo, mview, scene, movie.rock, movie.roll, etc.), or one can deliver presentations live from within PyMOL using scenes (stored in sessions)

RE: [PyMOL] scenes and movies

2005-10-29 Thread Warren DeLano
Folks, Everyone wants and needs this functionality (including myself), but it doesn't quite work right (yet). Although some instructions were posted awhile back using the "mview" command, there are bugs in the current releases that prevent this from working the way it should when it actually come