Re: [PyMOL] Reducing the surface rendering load for JSmol export

2013-07-18 Thread Robert Hanson
Nick, if these are just molecular surfaces, there is nothing to do in PyMOL. The PSE files have only an indication of which atoms to create the surface for, not the surface itself. Jmol/JSmol reads the PSE files directly, determines what molecular surface to create, and uses its own algorithms. Ri

Re: [PyMOL] Reducing the surface rendering load for JSmol export

2013-07-17 Thread Thomas Holder
Hi Nick, did you try the "surface_quality" setting? The default value is 0. That's for molecular surfaces. PyMOL> set surface_quality, -1 The resolution of isosurfaces is determined by the resolution of the map as far as I know. You can reduce the map resolution with the "map_halve" command. Ch