Hello:
To show the allowed torsion angles, run your protein through procheck
(available at http://www.ccp4.ac.uk/main.html), this will show the allowed
areas.
I would say that the convergence of an MD simlulation cannot be told by
torsion angles since the protein conformation with the most allo
Hi Liang:
The most up-to-date contour on the Ramachandran plot you can find at the
molprobity website: http://kinemage.biochem.duke.edu/molprobity/
It's a bit indirect, you have to submit a structure and then it will
give back a Ramachandran plot - but this plot agrees pretty well with
what we t
