Re: [PyMOL] Memory not released after load and delete of structure

2013-01-21 Thread Gianluigi Caltabiano
Hybrid unless I really need some plug-in. > > Gianluigi > > > Da: Jason Vertrees > A: Martin Hediger > Cc: "pymol-users@lists.sourceforge.net" > Inviato: Giovedì 20 Dicembre 2012 17:05 > Oggetto: Re: [PyMOL] Memory not released after load and delete of s

Re: [PyMOL] Memory not released after load and delete of structure

2012-12-22 Thread Martin Hediger
s >> A: Martin Hediger >> Cc: "pymol-users@lists.sourceforge.net" >> Inviato: Giovedì 20 Dicembre 2012 17:05 >> Oggetto: Re: [PyMOL] Memory not released after load and delete of structure >> >> Martin, >> >> That sounds like a memory leak i

Re: [PyMOL] Memory not released after load and delete of structure

2012-12-21 Thread Thomas Holder
ug-in. > > Gianluigi > > > Da: Jason Vertrees > A: Martin Hediger > Cc: "pymol-users@lists.sourceforge.net" > Inviato: Giovedì 20 Dicembre 2012 17:05 > Oggetto: Re: [PyMOL] Memory not released after load and delete of structure > > Martin, > &g

Re: [PyMOL] Memory not released after load and delete of structure

2012-12-21 Thread Gianluigi Caltabiano
luigi Da: Jason Vertrees A: Martin Hediger Cc: "pymol-users@lists.sourceforge.net" Inviato: Giovedì 20 Dicembre 2012 17:05 Oggetto: Re: [PyMOL] Memory not released after load and delete of structure Martin, That sounds like a memory leak in v1.3. Can you try a newer version of P

Re: [PyMOL] Memory not released after load and delete of structure

2012-12-20 Thread Martin Hediger
I'll give it a try with the newer versions. I just checked, and I believe I'm doing some cleaning up. Sure, I posted the scripte on this pastebin: http://pastebin.com/mC6Rs6wk Sorry for the layout (all pretty in development). In production, the script is invoked from the "frag" function. Marti

Re: [PyMOL] Memory not released after load and delete of structure

2012-12-20 Thread Jason Vertrees
Martin, That sounds like a memory leak in v1.3. Can you try a newer version of PyMOL and let us know if it still happens? We've fixed lots of bugs since v1.3. Also, is your script simply iterating over structures and deleting them when done? You sure you're not missing a cleanup step somewhere? (

Re: [PyMOL] Memory not released after load and delete of structure

2012-12-20 Thread Martin Hediger
Hi Jason, I'm using PyMOL 1.3. Best regards Martin On 20.12.12 15:53, Jason Vertrees wrote: > Hi Martin, > > Which version of PyMOL are you using? > > Cheers, > > -- Jason > > On Fri, Dec 21, 2012 at 1:37 AM, Martin Hediger wrote: >> Dear PyMOL users >> In a directory are PDB files of combine

Re: [PyMOL] Memory not released after load and delete of structure

2012-12-20 Thread Jason Vertrees
Hi Martin, Which version of PyMOL are you using? Cheers, -- Jason On Fri, Dec 21, 2012 at 1:37 AM, Martin Hediger wrote: > Dear PyMOL users > In a directory are PDB files of combined size equal to around 3MB. When > I load all files into PyMOL, I observe that the required RAM of PyMOL > (MacOS