Re: [PyMOL] Fwd: loading amber files and selecting traj frames

2013-08-01 Thread Pawel
Hi Thomas, Thanks for taking the time to add this. If I may suggest two things: 1. It might also be nice to add support for both "top" and "prmtop" extension to be recognized as an amber topology file by the load command. Many people in the Amber community are now using "prmtop" as the default

Re: [PyMOL] Fwd: loading amber files and selecting traj frames

2013-08-01 Thread Thomas Holder
Hi Pawel and everybody, > 1. PyMOL might have a bug here, or at least the amber file support is >rather limited at the momemt. Also note that the amber restart file >is not a trajectory but contains only one frame. PyMOL internally >treats rst and crd the same (which we should change,

Re: [PyMOL] Fwd: loading amber files and selecting traj frames

2013-07-31 Thread Thomas Holder
Hi Pawel, 1. PyMOL might have a bug here, or at least the amber file support is rather limited at the momemt. Also note that the amber restart file is not a trajectory but contains only one frame. PyMOL internally treats rst and crd the same (which we should change, actually). So this