Re: [PyMOL] Displaying an electrostatic potential on msms

2005-09-13 Thread Michael George Lerner
On Mon, 12 Sep 2005, Anna Feldman-Salit wrote: Dear All, I have a 0.98 PyMol version with APBS and Iso_Sliders plugins. However, my aim is not just visualize isosurfaces of electrostatic potential at certain values, but to display/map it on molecular surface. Hi, The APBS plugin will show y

Re: [PyMOL] Displaying an electrostatic potential on msms

2005-09-12 Thread Peter Adrian Meyer
Hi Anna, I generally run apbs seperately (due to difficulties with Alphas), but use the plugin to display with pymol. apbs will produce two output files, acc.dx and pot.dx. acc.dx is the electrostatic potential mapped to the solvent accessible surface; pot.dx is the electrostatic potential over