Hi Daniel,
If you don't HAVE to use Pymol, something like fPocket, HOLE or
PocketDepth from this list might do what you want:
http://www.vls3d.com/links/bioinformatics/binding-pockets
You might find this list interesting too:
http://www.vls3d.com/links/bioinformatics/peptides-antibodies-epito
Thank you for your responses guys.
CAVER is another possible PyMOL plugin http://www.caver.cz
Thanks Emilio. I have installed CAVER and I'm looking into it now - will
let you know if this works well for me.
Also thank you to Andreas and Doug. I'll be sure to check your suggestions
out! It doesn
Hi Daniel
CAVER is another possible PyMOL plugin http://www.caver.cz
>From the CAVER website, "CAVER provides rapid, accurate and fully
automated calculation of tunnels and channels in static and dynamic
structures. The molecules amendable to analysis of CAVER include
proteins, nucleic acids, or i
I haven't used it before, but I there is a PyMOL plugin called KVfinder
that detects cavities. Potentially this offers an approach for you.
On Jul 20, 2016 12:05 AM, "Daniel James" wrote:
> Hi all,
>
> I haven't used this list before but can't find an answer to my question
> elsewhere. I am selec
