I think that PyMOL can only align different objects, not different
selections. There may be a more elegant way, but ..
If your chains are A,B,C..H, try this from the PyMOL prompt to create
different objects:
for c in 'A B C D E F G H'.split():cmd.create(c+'_chain','chain '+c)
and this to align
Tony Giannetti wrote:
Hey everyone,
I know I should be past this, but I can't seem to figure out how to do
this. I have a couple of crystal structures that contain multiple copies in
the asymmetric unit, and I would like to superimpose each copy to see what
the differences are. One way is
