RE: [PyMOL] movie of diffusion of atoms/molecules

2006-02-16 Thread Warren DeLano
e.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Satya Arjunan > Sent: Thursday, February 16, 2006 6:11 PM > To: EPF (Esben Peter Friis); pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] movie of diffusion of atoms/molecules > > Hi Esben and List, > > Thank you

Re: [PyMOL] movie of diffusion of atoms/molecules

2006-02-16 Thread Satya Arjunan
Hi Esben and List, Thank you for your answering my questions. I realize now that it would be better to just represent a molecule as a sphere with diameter corresponding to the protein's diameter because like you said, with 4000 molecules, I don't need atomistic detail. Here is my situation:

RE: [PyMOL] movie of diffusion of atoms/molecules

2006-02-12 Thread EPF (Esben Peter Friis)
Hi Satya You can use the command "translate" to move the individual objects in pymol. Is takes a list of 3 floating points numbers as the translational vector. I don't know how Pymol would handle 4000 objects, but an alternative might be to load them as states within one object, and then use