Hi Anders,
With cmd.get_povray() (i.e. cmd.get_povray()[1]) you'll
get all vertex-coordinates describing the surface, but I
wouldn't know how you could use it to map something on
there neatly.
Cheers,
Tsjerk
On Wed, 22 Jun 2005 08:55:05 +0200
madsen wrote:
Dear Robert, Tsjerk, Jean-Phil
Dear Robert, Tsjerk, Jean-Philippe and Tim
thanks for your replies.
The colouring of atoms according to B-factors
or some other property is nice, but I really need
sub-atomic resolution of the properties that I would
like to map on the surface.
So, as Jean-Philippe and Tim are discussing, I would
On Tue, Jun 21, 2005 at 01:20:38PM -0500, Cartailler, Jean-Philippe wrote:
>
> Speaking of, is there any way of extracting the polygons of the
> surface geometry (or points, for that matter)?
>
I believe pymol has some odd internal data structure it uses, but I
don't think there is a way to export
Anders,
* Anders Madsen [2005-06-21 16:33] wrote:
> Dear PyMol users,
> I would like to colour the beautiful
> PyMol molecular surfaces according to
> properties of the atoms involved.
> Has anyone experimented with this?
>
> E.g. by accessing the coordinates that define
> the surface and assign
Speaking of, is there any way of extracting the polygons of the surface
geometry (or points, for that matter)?
JP
-Original Message-
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Anders Madsen
Sent: Tuesday, June 21, 2005
Hi Anders,
You can add a property value to the b-factor or occupancy
field in the pdb file. Then you can color using the
spectrum command. Just have a look at the help for that.
For real fancy coloring, either in some way construct a 3D
map, which you can read in in Pymol (can someone give m
