Marilyn,
You've got to show the actual lines or sticks:
show sticks, (cys/ca+cb+sg) and byres (cys/sg and bound_to cys/sg)
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Scientific LLC
. 400 Oyster Point Blvd., Suite 213
. South San Fr
,(prot2 and don), 3.2
> > dist HBD, (prot1 and don),(prot2 and acc), 3.2
> > delete don
> > delete acc
> > hide (hydro)
> >
> > hide labels,HBA
> > hide labels,HBD
> >
> > # NOTE: that you could also use this approach between two
> > # non-overl
these...does it need to?
Warren
--
mailto:war...@sunesis.com
Warren L. DeLano, Ph.D.
-Original Message-
From: Kaushik Raha [mailto:kxr...@psu.edu]
Sent: Friday, September 20, 2002 1:36 PM
To: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Disulfide Bonds
A similar question: Does P
OL doesn't currently parse these...does it
need to?
Warren
--
mailto:war...@sunesis.com
Warren L. DeLano, Ph.D.
> -Original Message-
> From: Kaushik Raha [mailto:kxr...@psu.edu]
> Sent: Friday, September 20, 2002 1:36 PM
> To: pymol-users@lists.sourceforge.net
> Subjec
A similar question: Does PyMOL have a PDB file parser that can read
disulphide linkages from the file and connect the atoms or one has to
explicitly issue bond commands. Also, can PyMOL display hydrogen bonds
without the user having to write out a list?
thanks,
Kaushik Raha.
Penn State Univer
Alex,
If the sulfurs are within disulfide bonding distance, PyMOL should
connect them by default. If this is not happening, please send me the PDB file
so I can take a look-see.
Otherwise, you can use the "bond" command to attach them:
bond 24/sg,26/sg
bond 56/sb,99/sg
unpick
