Warren, Mark;
thanks for these suggestions concerning "overexposed" images. We have
dumped Warren's settings into our pymolrc file and are now getting much
better results...
Best,
Wulf
Mark A Saper schrieb:
Wulf et al,
I've had similar results to what you report even with a session fil
Wulf et al,
I've had similar results to what you report even with a session file
created with the latest version of PyMol. You should first try what
Warren suggests. Then, if the specular highlights still look too
contrasty, you can try reducing the specular_intensity to about 0.2
and a
;t be there).
use
set ray_legacy_lighting, 1
with the above settings
Cheers,
Warren
-Original Message-
From: Wulf Blankenfeldt [mailto:wulf.blankenfe...@mpi-dortmund.mpg.de]
Sent: Mon 3/6/2006 7:23 AM
To: Warren DeLano
Subject: Re: [PyMOL] Displaying/defining double bonds in a ligand mol
Wulf,
The easiest thing would be to convert your small molecule to an SDF, MOL, or
MOL2 format before loading it into PyMOL.
Short of that, you'd have to select each bond independently (ctrl-right-click
while in editing mode) and use Ctrl-W to set the valences.
Cheers,
Warren
-Original M
