Re: [PyMOL] write a script from pse file

2011-03-13 Thread Maia Cherney
Hi, My major problem is hydrogen bonds (hb). Under each hb1, or hb2, .. hb10 there are many hbs, (not just one individual hb). I want a list of them for each hb. Now how can I use "get " to see all hbs in hb1, etc? I need to make a table of all hydrogen bonds for this pse. Maia Tsjerk Wassenaa

Re: [PyMOL] write a script from pse file

2011-03-13 Thread Tsjerk Wassenaar
Hi, Well, a .pse file indeed is a kind of dump. But it does contain the information, of which most can be extracted. To begin with, it is quite trivial to get a listing of the settings (get) and of the view (get_view). It is also possible to obtain the color per atom, for which code is somewhere i

Re: [PyMOL] write a script from pse file

2011-03-13 Thread Schubert, Carsten [PRDUS]
nal Message- > From: Maia Cherney [mailto:ch...@ualberta.ca] > Sent: Sunday, March 13, 2011 7:07 AM > To: Jason Vertrees > Cc: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] write a script from pse file > > Hello, > > I have an old saved session as a pse file

Re: [PyMOL] write a script from pse file

2011-03-12 Thread Maia Cherney
Hello, I have an old saved session as a pse file. How can I save a script that produced that pse file. It may be easier just to get information about each object in that pse file. Maia -- Colocation vs. Managed Hostin