Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-27 Thread Mike Marchywka
> From: jason.vertr...@schrodinger.com > Date: Tue, 27 Nov 2012 12:37:41 -0600 > Subject: Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or > related libraries > To: marchy...@hotmail.com > CC: pymol-users@lists.source

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-27 Thread Jason Vertrees
Mike, > Although I am curious now if I had a pdb that lacks hydrogens, like I did in > this case, > what pymol facilities are there for adding them? Apparently you have some > editing h_add object_name Type, "help h_add" or check out h_add on the PyMOLWiki (http://www.pymolwiki.org/index.php/H

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-27 Thread Mike Marchywka
> From: jason.vertr...@schrodinger.com > Date: Mon, 26 Nov 2012 10:37:52 -0600 > Subject: Re: was: [PyMOL] Mobile PyMOL Problem and Solution/ Now: pdb or > related libraries > To: marchy...@hotmail.com > CC: pymol-users@lists.sourceforge.net > > Hi Mik

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-26 Thread Jason Vertrees
Hi Mike, > I was trying to figure out what to eat today so naturally I started looking > for PDB libraries > with food components. I was looking for garlic related chemicals when I came > across this, > > http://molecules.gnu-darwin.org/ > > which seems to have many pdb files. My question I gue

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-25 Thread Mike Marchywka
n, 25 Nov 2012 19:00:08 -0500 > Subject: Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or > related libraries > > > > > > > > > Date: Sun, 25 Nov 2012 23:49:26 +0100 > > From: spel...@users.sourcefor

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-25 Thread Mike Marchywka
> Date: Sun, 25 Nov 2012 23:49:26 +0100 > From: spel...@users.sourceforge.net > To: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or > related libraries > > Hi Mi

Re: [PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-25 Thread Thomas Holder
Hi Mike, you can fetch molecular files from any web address with the "load" command. Examples: File type recognized from file extension: PyMOL> load http://molecules.gnu-darwin.org/html/00150001_00175000/153919/153919.pdb File type given with "format" argument: PyMOL> load http://pubchem.ncbi.

[PyMOL] was: Mobile PyMOL Problem and Solution/ Now: pdb or related libraries

2012-11-25 Thread Mike Marchywka
I was trying to figure out what to eat today so naturally I started looking for PDB libraries  with food components.  I was looking for garlic related chemicals when I came across this, http://molecules.gnu-darwin.org/ which seems to have many pdb files. My question I guess is, what does pymo