You have to generate the symmetry mates before you align the two structures.
Then you can generate an object containing all symmetry mates for one
structure, e.g by putting them as different frames on one object, and do the
alignment with this object.
Annemarie
Forwarding messages --
Dear All,
I have a symmetry problem, which I hope I can get your help.
For both PDB 2zan and 2zam, they are for the same protein, they conformation
were similar except that 2zam was apo and 2zam was ATP binding. 2zaz was got by
soaking the 2zam crystal with ATP. Both were P65 space group
