Re: [PyMOL] run a pymol command using the terminal

2014-10-24 Thread Matthew Baumgartner
Hi Cedric, Check out the "Launching PyMOL from Python programs" section from here: http://www.pymolwiki.org/index.php/Python_Integration HTH, Matt On 10/24/2014 02:02 PM, Cedric wrote: > Hi, > > I know how to write small scripts in pymol and then call them within pymol. > > But I am not sure ho

[PyMOL] run a pymol command using the terminal

2014-10-24 Thread Cedric
Hi, I know how to write small scripts in pymol and then call them within pymol. But I am not sure how to use one of pymol commands in a python script that I can run in the terminal. Example, I want to align a series of files in a folder but for test purposes, let's say 1.pdb and 2.pdb… I trie