Dear Pascal,
Do you have any errors/warning when launching PyMOL?
If you fetch a structure in your PML file, be sure that the structure is
downloaded before to start the plugin (use: fetch pdb_code, async=0)
Can you send me some part of your PML file, so I can help you to debug?
Best regards,
Hi Pascal,
PyMOL treats .pml and .py files differently. The "cluster_count"
script was written as a .py file as needs to be used as such.
run cluster_count.py
cluster_count PO4
worked just fine when run as a Python file.
Cheers,
-- Jason
On Tue, Jul 9, 2013 at 6:06 AM, Pascal Auffinger
wrot
Hi,
I tried to use the "cluster_count" script
(http://www.pymolwiki.org/index.php/Cluster_Count)
in a pymol.pml file. Unfortunately I get the following message:
---
PyMOL>cluster_count PO4
Traceback (most recent call last):
File "/home/sws2/Desktop/pymol/modules/pymol/parser.py", line 464, in p
