Re: [PyMOL] problem with ray of PNG using pymol in non-gui mode

2022-01-21 Thread Enrico Martinez
yep, it is not possible actually to switch off the Ray using no-gui mode in pymol ( i've just read another topic on this case). BTW I found that the problem of the disappearing of carton is mor related to the transparency, since it had already been set for the surface as well. In the case when I se

Re: [PyMOL] problem with ray of PNG using pymol in non-gui mode

2022-01-20 Thread Saurabh Gayali
Have you tried setting ray_trace_mode? Info here: https://pymolwiki.org/index.php/Ray -- *Saurabh Gayali* / Post Doctoral Fellow saurabh.gay...@gmail.com / +91 8800412916 *CSIR-IGIB* New Delhi, India [image: Mailtrack]

[PyMOL] problem with ray of PNG using pymol in non-gui mode

2022-01-20 Thread Enrico Martinez
Dear Pymol Users! I've faced the problem of saving a PNG image without ray using the png command in non-gui mode. First if I do it in pymol gui #cmd.png('test.png',width=800,height=800,ray=0) .. it produces fine image (without ray) However if I execute the same command inside of my bash sript: $p