Hi Sean,
Use 'fit' instead.
# get two sample proteins
fetch 1cll 1ggz, async=0
# show their object matrices
print cmd.get_object_matrix("1cll")
print cmd.get_object_matrix("1ggz")
# fit the first 26 AAs via alpha carbons
fit 1cll///4-29/CA, 1ggz///4-29/CA
# show the object matrices, again
prin
Hi PyMOLers,
I was wondering if this problem was exclusive for my case. I was using
"pair_fit" (rather than super/align) to superimpose two conformations of the
same structure and noticed two things:
1) After being superimposed, BOTH structures (source and target) end up moving
rather than j
