Hi Cameron,
> hi Michael,
>
> I finally got the APBS plugin to work
> (http://mccammon.ucsd.edu/~cmura/PYMOL_examples/apbs_plugin.html).
Great! (and nice pictures :))
> The only catch was that I had to make the following changes near line
> 500 of your layer4/Cmd.c in order to build the CVS vers
hi Michael,
I finally got the APBS plugin to work
(http://mccammon.ucsd.edu/~cmura/PYMOL_examples/apbs_plugin.html).
I'm not sure what I did differently this time, but I did rebuilt PyMOL
from scratch and re-downloaded your python modules and modified source
files. The only catch was that I h
Michael,
| If really do have an up-to-date version of my code, we should probably
| figure out what's wrong off-list.
I have merged your extensions into PyMOL 0.95. Terrific work.
I would like to suggest, although it may be added work for you,
that you keep a set of files for the curren
Hi,
> (1) fresh, clean install of the pymol-0.95-1.rh90.py22 RPM, downloading
> the various electrostatics.py, dx.py, etc. modules from your website and
> then using the load_dx() function with DX maps already calculated in a
> standalone APBS run...
This won't work. For now, PyMOL needs to be r
hi Michael et al.,
I'm still unable to visualize DX-formatted electrostatics maps in PyMOL,
as described in my earlier email (attached). I've tried various
scenarios to get this to work, including the following:
(1) fresh, clean install of the pymol-0.95-1.rh90.py22 RPM, downloading
the var
Hi,
My code should work again. The parsing errors were probably caused by the
fact that my code was out of date with respect to the current CVS version
of PyMOL. Please let me know if it doesn't work!
Thanks,
-michael
> Has anyone had luck with loading DX format electrostatic potential maps
>
Hi,
This is my fault. The scripts are a bit out of date and my Linux box is
broken at the moment, so I haven't been able to bring my code up to date
with the most recent PyMOL build. I'll put a warning on my webpage. My
electrostatics wizard should still work, but the APBS tools (which are
requ
Has anyone had luck with loading DX format electrostatic potential maps
that were generated by APBS? I tried to use the electrostatics wizard and
load_dx function created by Michael Lerner
(http://www-personal.umich.edu/~mlerner/Pymol/) but I get parsing errors
when I try to load a map calculat
