Re: [PyMOL] internal cavity lighting

2013-05-29 Thread Hurt, Darrell (NIH/NIAID) [E]
adr...@uci.edu] Sent: Wednesday, May 29, 2013 01:41 PM To: Patrice Peterson Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] internal cavity lighting Thanks Patrice, I have used VMD mostly to look at trajectories. I should delve into in a bit more. I really like having a one stop-shop for i

Re: [PyMOL] internal cavity lighting

2013-05-29 Thread Yarrow Madrona
Thanks Patrice, I have used VMD mostly to look at trajectories. I should delve into in a bit more. I really like having a one stop-shop for illustration which is why I like pymol. However, I have heard a lot about POV-ray and want to explore it. I have also heard that it is a "black-hole" and very

Re: [PyMOL] internal cavity lighting

2013-05-29 Thread Yarrow Madrona
Thanks Thomas! This is exactly what I was looking for. -Yarrow > Hi Yarrow and Patrice, > > PyMOL introduced ambient occlusion in version 1.5.0 for surface > rendering. Try this: > > fetch 1rx1, async=0 > as surface > set ambient_occlusion_mode > > If you are a pymol sponsor, visit this page: >

Re: [PyMOL] internal cavity lighting

2013-05-29 Thread Thomas Holder
Hi Yarrow and Patrice, PyMOL introduced ambient occlusion in version 1.5.0 for surface rendering. Try this: fetch 1rx1, async=0 as surface set ambient_occlusion_mode If you are a pymol sponsor, visit this page: http://pymol.org/dsc/dokuwiki/doku.php?id=media:ambient_occlusion Hope that helps.

Re: [PyMOL] internal cavity lighting

2013-05-29 Thread Patrice Peterson
On 13-05-28 14:11, Yarrow Madrona wrote: Hi, I saw a post on this sight a while back about how to move the lighting. However, I have not seen any information on how to change the lighting of an internal cavity. I want the internal cavity to appear darker as it would be more realistic. Howeve

[PyMOL] internal cavity lighting

2013-05-28 Thread Yarrow Madrona
Hi, I saw a post on this sight a while back about how to move the lighting. However, I have not seen any information on how to change the lighting of an internal cavity. I want the internal cavity to appear darker as it would be more realistic. However, it is almost like there is a light source co