...@lists.sourceforge.net] On Behalf Of Thomas S.
Leyh, Ph. D.
Sent: Tuesday, May 27, 2008 1:53 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] interior protein-surfaces
From time to time I find it valuable to view the suface of a
ligand-binding pocket looking out from the surface's interior. Th
I'm not sure it's exactly what you're looking for, but this seems similar:
http://hollow.sourceforge.net/
On Tue, May 27, 2008 at 4:53 PM, Thomas S. Leyh, Ph. D.
wrote:
> From time to time I find it valuable to view the suface of a
> ligand-binding pocket looking out from the surface's in
Hi Tom,
I'm not sure this (http://lmc.uab.cat/~xavi/) is what you're looking
for.
If it is, you can build the surface in the CASTp server (or using the
PyMOL plugin) and then display the surface of the pocket (the .poc
object) of the residues forming the binding pocket (e.g. 5 Ang. around
Hi Tom,
On Tue, May 27, 2008 at 10:53 PM, Thomas S. Leyh, Ph. D.
wrote:
> From time to time I find it valuable to view the suface of a
> ligand-binding pocket looking out from the surface's interior. This is
> accomplished in a variety of ways - principally, zooming and clipping. It
> wou
From time to time I find it valuable to view the suface of a
ligand-binding pocket looking out from the surface's interior. This is
accomplished in a variety of ways - principally, zooming and clipping. It
would be wonderful to be able to represent just the "skin" of the active site
wra
