Thank you. That was perfect. I see that Mesh_mode works the same way.
Yours &c.
John Quinn
133 Jay St.
Albany, NY 12210
(518) 312-7033
jqu...@uchicago.edu
On May 20, 2013, at 4:21 PM, Jason Vertrees
wrote:
> Hi,
>
> Extracting/copying the ligand is one way
> (http://www.pymolwiki.org/inde
John,
fetch 1rx1, async=0
set surface_mode, 3
as surface, org
Cheers,
-- Jason
On Mon, May 20, 2013 at 3:21 PM, John Quinn wrote:
> Hi Troels,
>
> I've tried that in the past (and just tried again to make sure) but it
> doesn't work for me.
>
> By the way, I'm running the latest open sourc
Hi,
Extracting/copying the ligand is one way (
http://www.pymolwiki.org/index.php/Surface#Creating_a_Closed_Surface). You
can also set surface mode (http://pymolwiki.org/index.php/Surface_mode) or
flag a selection (http://www.pymolwiki.org/index.php/Flag).
Cheers,
-- Jason
On Mon, May 20, 2013
Hi Troels,
I've tried that in the past (and just tried again to make sure) but it doesn't
work for me.
By the way, I'm running the latest open source version of PyMol installed via
fink on a Mac
Yours &c.
John Quinn
133 Jay St.
Albany, NY 12210
(518) 312-7033
jqu...@uchicago.edu
On May 20,
Try to extract the ligand from the protein, so you get two separate objects.
Best
Troels Emtekær Linnet
2013/5/20 John Quinn
> I have a question I've never been able to figure out. If I have a pdb file
> with a ligand bound in a protein I can show the protein as a mesh or
> surface but I can'
I have a question I've never been able to figure out. If I have a pdb file with
a ligand bound in a protein I can show the protein as a mesh or surface but I
can't ever show the surface of the ligand. Any advice? What am I missing?
Thank you very much.
Yours &c.
John
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