n...@lists.sourceforge.net
> [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf
> Of Andreas Förster
> Sent: Wednesday, February 13, 2008 11:20 AM
> To: Michael Summers
> Cc: pymol-users@lists.sourceforge.net
> Subject: Re: [PyMOL] help with batch mode
>
> Hey Michael,
---
> From: pymol-users-boun...@lists.sourceforge.net
> [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf
> Of Michael Summers
> Sent: Wednesday, February 13, 2008 8:59 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] help with batch mode
>
> Colleagues,
>
Hey Michael,
with some commands, you can use the (somewhat poorly documented) option
'quiet=0' to get results sent to standard output, like so:
load ./final/final.001.pdb
load ./final/final.002.pdb
fit (final.002///13-30/c,ca,n), (final.001///13-30/c,ca,n), quiet=0
Andreas
Michael Summers
Colleagues,
Does anyone have a good method for generating alignment statistics in
batch mode using pymol?
I think I'd like to do something like:
pymol -c sup.py > data.txt
where sup.py is something like:
load ./final/final.001.pdb
load ./final/final.002.pdb
fit (final.002///13-30/
