Hi Jon,
You also have to update the three numbers before. So to go from white to
blue is
cmd.load_cgo([i for j in x for u,v,f in zip(j,j[1:],range(n)) for i in
[9.0]+u+v+[1.3, 1-(1.*f)/n,1-(1.*f)/n,1, 1-(1.+f)/n,1-(1.+f)/n,1
]],"trace")
If you want to go from blue to white to red, it's proba
Hey :)
Can't resist the challenge...
For any given ensemble, you can draw a trace through the C-alphas using the
following lines, illustrated here for the NMR ensemble '1NMR':
# Get the structure
fetch 1nmr
# Get the number of states
n = cmd.count_states('1nmr')
# Collect the C-alpha coordinate
Hi,
(replying to my own message)
On Thu, 2012-12-13 15:52 EST, Robert Campbell
wrote:
> Hi Jon,
>
> On Thu, 2012-12-13 16:09 EST, Jonathan Grimes
> wrote:
>
> > Hi All,
> >
> >I have 2 different states of the same molecule..different
> > conformations generated from MD, so the
Hi Jon,
On Thu, 2012-12-13 16:09 EST, Jonathan Grimes
wrote:
> Hi All,
>
>I have 2 different states of the same molecule..different
> conformations generated from MD, so the same number of Calpha atoms, with
> a direct 1:1 mapping between Calphas with the same residue numbering.
>
Hi All,
I have 2 different states of the same molecule..different conformations
generated from
MD, so the same number of Calpha atoms, with a direct 1:1 mapping between
Calphas
with the same residue numbering.
I would like to draw a "bond" between equivalent C-alpha atoms, a
