Re: [PyMOL] discrepancy between python and commandline script

2013-11-08 Thread Pawel
Hi, I've continued to investigate and have gotten even more confused. This script: from numpy import * import sys cmd.delete("all") cmd.load( "../4lzt_quasi.pdb", "full") cmd.create("anew", "full", 1, 1) print "First 3 shifts: ", nm[0:3], "\n" cmd.alter_state(1,"anew" , "

[PyMOL] discrepancy between python and commandline script

2013-11-07 Thread Pawel
Hello, I'm trying to understand what seems like an inconsistency between PyMOL commandline and python scripts. I have the following commandline script: delete all load ../4lzt_quasi.pdb, full cmd.create("anew", "full", 1, 1) cmd.alter_state(1,"anew" , "x,y,z = x+nm[(ID-1)*3], y+