e.net
[mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of jonathan
sheehan
Sent: Tuesday, March 27, 2007 10:40 AM
To: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] dimer
On 3/22/07, Bandaranayake, Rajintha
wrote:
> symexp sym=pdb,(pdb),4.0 # Creates symmetry partners withi
On 3/22/07, Bandaranayake, Rajintha wrote:
symexp sym=pdb,(pdb),4.0 # Creates symmetry partners within 4 A of molecule
pdb
Very nice. Is there a way to do this using the BIOMT records?
Sent: Thu 3/22/2007 5:57 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] dimer
Hi all,
I am trying to open a crystal structure of a dimer but I can only get
the monomer to open. The pdb file has the symmetry coordinates but I
don't know how to turn them on. Can anyone help me?
Hi all,
I am trying to open a crystal structure of a dimer but I can only get
the monomer to open. The pdb file has the symmetry coordinates but I
don't know how to turn them on. Can anyone help me?
Alex,
* Alex Dajkovic [2005-04-15 10:30] wrote:
> Dear all,
>
> I have a structure of a dimer and would like to see the surface at the
> interface of the two proteins. Is there a way to do this in PyMol?
Say the object has chains A and B:
create chainA, object & c. a
create chainB, objec
Hi Alex,
this should get you started. There may be other ways to do this, but
this works:
create two objects from your dimer
create Ach, /yourPDB//A
create Bch, /yourPDB//B
show surface, Ach
color grey, Ach
color red, Ach within 5 name Bch
This will color red all those objects within 5 Angst
Dear all,
I have a structure of a dimer and would like to see the surface at the
interface of the two proteins. Is there a way to do this in PyMol?
Alex
