PyMOL] default fetch format
Hi Thomas:
thanks a lot for helpful advice.
May I ask is there any superior features of mmCIF format against PDB format?
regards
Albert
On 11/22/2015 04:15 PM, Thomas Holder wrote:
> Hi Albert,
>
> Unfortunately the default fetch type can't be conf
Hi Albert,
> May I ask is there any superior features of mmCIF format against PDB format?
It solves all the identifier limitations of the PDB format, like number of
chains, number of residues, and number of atoms. Besides that, the PDB format
will be phased out by the wwPDB in favor of the mmCI
Hi Thomas:
thanks a lot for helpful advice.
May I ask is there any superior features of mmCIF format against PDB format?
regards
Albert
On 11/22/2015 04:15 PM, Thomas Holder wrote:
> Hi Albert,
>
> Unfortunately the default fetch type can't be configured. But you can
> override the fetch comm
Hi Albert,
Unfortunately the default fetch type can't be configured. But you can override
the fetch command. Example which you could place in your ~/.pymolrc file:
python
from pymol import cmd
def fetchpdb(*args, **kwargs):
if 'type' not in kwargs:
kwargs['type'] = 'pdb'
return
Hello:
I noticed that if we run command:
fetch 2ac1
to get PDB into pymol in Version 1.8.0, it downloaded .cif file by
default. I am just wondering is it possible to change the default format
as .pdb file?
thanks a lot
Albert
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