Cameron
> This reminds me of a related question I once had -- does
> anyone know if there's a way to create selections based
> loosely (and very generally) on bond connectivity criteria,
> in a somewhat similar manner as specified in force fields
> used for proteins. It would be neat to be a
Hi ,
Rather than using atom selection macros (/1jff//a/etc.../), the easiest
way is probably to execute the following command, which takes advantage
of PyMOL's built-in "hetatm" single-word selector:
select just_protein, ! hetatm
The "hetatm" selector consists of all atoms from the PDB fi
Hi Hanspeter,
If you want to use a stock pdb that does not contain chain IDs, you should
create
the object using either a residue or atom selection. For example
(using residue ids for kinesin)
create kin=(/1BG2///3:325/)
However, for your convenience I've attached a modified pdb that
contains dif
I'm trying to create an object of a protein from a PDB file that doesn't
give a chain ID (pdb is 1BG2).
I normally do something like:
create atub=(/1jff//a/)
to pull a specific chain out of a PDB file, but 1BG2 doesn't have a chain
name. And if i use "create kin=(/1BG2)", the object kin get
