> Hi Everyone,
>
> I have been trying to build a virus capsid using pymol. The biological unit
> for the complete structure is not available. :(
>
> My first attempt at getting this done was by using the ?rotate? and
> ?translate? commands. Unfortunately, these commands can only move objects
>
Hi Ezra,
Capsid was a typo, I ment to say the matrix of the virus. The pdb1 file is a
trimer of the protein. I now how the trimeric form of the protein interacts to
form the matrix and was hoping that a script could help me build the complete
matrix sphere.
Marcelo
> On Apr 17, 2015, at 4:5
The full biological unit should be available in biological assembly file.
Have you tried using the fetch command?
i.e.:
fetch 1avd, type=pdb1
set all_states, on
The first retrieves BA #1, the all_states shows the models.
If there is something wrong with the assembly file - then by all means
c
Hi Everyone,
I have been trying to build a virus capsid using pymol. The biological unit for
the complete structure is not available. :(
My first attempt at getting this done was by using the “rotate” and “translate”
commands. Unfortunately, these commands can only move objects either relative
