Hi Shukun,
> Thanks for your nice replies. I followed Tom's script, and the problem
> solved. Also, I found there was no difference whether the
> "segi=1"argument was appended or not. I've checked at the PymolWiki site
> and haven't found any "matrix_copy" arguments like 'segi'.
"matrix_copy" doe
Hi Shukun,
why and how did the matrix_copy command fail? If you swap step (2) and
(3) everything should be fine. Try this:
fetch 2xwu 2x19, async=0
as ribbon
symexp mates, 2x19, 2x19, 6.0, segi=1
align /2x19//B, /2xwu//B
matrix_copy 2x19, mates*
By the way, the segi=1 argument of the symexp com
I've never found a clean way to do this - what I do is to save a PDB file
with the original model and the relevant symmetry mates, which I then use
for the alignments. There may be a way to do is with object groups,
however. (FYI, you'll probably also need to rename the chain IDs for the
symmetry
Dear Pymol users,
I want to compare the crystal packing and contacts of two different space
groups of the same protein using pymol. Here's what I did: (1)loaded two
structures; (2) aligned two structures; (3) generated symmetry-related
objects of two structures. However, the symmetry-related molec
