Re: [PyMOL] coloring based on sequence identity

2008-08-25 Thread Robert Campbell
Dear Morri, On Fri, 22 Aug 2008 13:35:32 -0700, Morri Feldman wrote: > Dear Rob, > > I'm interested in using your variability script with a substitution matrix. > Would you please send me an example of a substitution matrix file? Thanks > for writing such a useful script. Sure. Attached are

Re: [PyMOL] coloring based on sequence identity

2007-06-27 Thread Robert Campbell
* Martin Höfling [2007-06-27 01:33] wrote: > Am Dienstag, 26. Juni 2007 schrieb Eva Vanamee: > > Hi, > > > > I'd like to color a molecule based on its sequence similarity to another > > molecule. > > Can this be done in Pymol? > > If you can quantify "similarity" in a number you can write it into

Re: [PyMOL] coloring based on sequence identity

2007-06-26 Thread Martin Höfling
Am Dienstag, 26. Juni 2007 schrieb Eva Vanamee: > Hi, > > I'd like to color a molecule based on its sequence similarity to another > molecule. > Can this be done in Pymol? If you can quantify "similarity" in a number you can write it into the b-factors of the atoms and then color it by them. Bes

[PyMOL] coloring based on sequence identity

2007-06-26 Thread Eva Vanamee
Hi, I'd like to color a molecule based on its sequence similarity to another molecule. Can this be done in Pymol? Thanks in advance. - Eva