Vaheh,
You can modify the b-factor column, and color by b-factor. I have used
various value-to-bfactor scripts, with different measures of alignment
similarity.
The one problem I've had is extending the Ca color to the rest of the
residue in stick mode.
Jed
On Oct 28, 2015 3:34 PM, "Oganesyan, Vah
Colleagues,
Was wondering if there is a functionality built in PyMOL for coloring of the
molecule based on sequence identity/similarity? This topic was discussed
briefly in 2007 and the answer was from Robert Campbell suggesting using his
scripts. Seems to be a good tool to have for anyone.
