Hi H. Adam -
Try the http://pymolwiki.org/index.php/Distancetoatom script by Andreas
Warnecke and use it to set b (or your own custom property in recent Incentive
PyMOL versions) based on the distance from a point.
Hope that helps.
Cheers,
Jared
--
Jared Sampson
Columbia University
On Mar 23
I have a pdb ‘xyz1’ and create a mapA, then create a surfA.
set surface_quality, 1
alter all, b=50
alter all, q=1
set gaussian_resolution,5
map_new mapA, gaussian, 1, sele or pdb, 6
isosurface surfA, mapA
I can then color that surfA with any solid color.
How can one color the surfA with a rainbo
