Re: [PyMOL] caver plugin

Hi Yeping, unfortunately, the caver plugin doesn't take a selection expression, but only selection names. Regarding your selection expression, you miss the "name" operator. So this should work: PyMOL> select startsele, chain A and resid 21 and name CA In Caver: "Specify selection: startsele" Ho

[PyMOL] caver plugin

Dear pymol users,   Does anyone use the caver plugin of pymol to analyze a ion channel? I don't know how to specify selection for the starting of plugin. Should the starting point be at the center of the channel where there is empty and no atoms in the molecule? or should it be certain atom of t

[PyMOL] caver plugin

Hi Has anyone successfully used Caver plugin using gromac trajectory files? Any suggestion is appreciated. Thanks Murali -- Dr. Ramachandran Murali Associate Professor 243 John Morgan Building Department of Pathology & Lab. Medicine University of Pennsylvania Philadelphia, PA-19104-6082

[PyMOL] caver plugin

Hi Has anyone successfully used Caver plugin using gromacs trajectory files? Any suggestion is appreciated. Thanks Murali -- Dr. Ramachandran Murali Associate Professor 243 John Morgan Building Department of Pathology & Lab. Medicine University of Pennsylvania Philadelphia, PA-19104-6082