Hi James,
paste the following piece of code into the PyMOL command line. It does
more or less the same as "A > align > all to this" but with "super"
instead of "align".
names = cmd.get_object_list()
for name in names[1:]: cmd.super(name, names[0], object='aln')
The first object in the list wil
By the way also I've tried use super_all script wich can do multiple
alignment via Super command
pldserver1.biochem.queensu.ca/~rlc/work/*pymol*/*super_all*.py
but as the consequense the resulted sequence alignment in CGO in pair-wise
manner. How could I make something like this super all but for
Jason,
but as I've understood super did alignment only for two structures, Is
there any way to do the same operation for ensemble ? (for CE as I
understood this could be done by alignto command but it lack for seq
alignment iin this case)
James
2011/11/21 Jason Vertrees
> Hi James,
>
> > set
Hi James,
PyMOL can do what you want, but you need to monitor the scientific
validity at each step.
First load all your proteins into PyMOL. If that must happen in one
command, please see LoadDir (http://pymolwiki.org/index.php/LoadDir).
Next, for the target protein with no insertion, let's cal
Dear Pymol Users!
I want to solve one methodologycal problem via Pymol. I have 20 x-ray
structures of one protein presented in different conformations.
The main problem is that all those structures consist of Hen Lysozyme
inserted in the protein for the improvement of the crystallographic
proper
