Hi Martin,
> Could you point me out to the Python module where the "reader" is
> implemented?
> I would be interested in seeing how PyMOL handles this because I
> recently had to write something similar.
See pymol/modules/pymol/importing.py
Look for "def load".
Cheers,
-- Jason
> On 23.07.1
Dear Jason
Could you point me out to the Python module where the "reader" is
implemented?
I would be interested in seeing how PyMOL handles this because I
recently had to write something similar.
Thanks
Martin
On 23.07.12 18:19, Jason Vertrees wrote:
> Hi Malai,
>
> Thanks for bringing thi
Hi Malai,
Thanks for bringing this to our attention. The file you sent does have
a TER record (which separates chains) but it went ahead and
re-declared chain A. This confused PyMOL. You can easily correct this
by forcing PyMOL to start a new model. Just insert,
ENDMDL
on line 4379 of your file.
h?hl=en&redir_esc=&client=ms-android-verizon&source=android-launcher-widget&v=133247963&qsubts=1343038842699&action=devloc&q=segid+pdb+file&v=133247963
>
> Good luck,
>
> Eric Larson
> Boehringer Ingelheim
> Ridgefield, CT
>
> > Date: Sat
Hi Malai,
Check whether all residues have unique identifiers (residue id + chain id).
I often see this happen for multiple chains with no or identical
identifiers, in which different residues share the same number.
Cheers,
Tsjerk
On Jul 21, 2012 12:46 AM, "Jason Vertrees"
wrote:
Hi Malai,
Wh
Hi Malai,
What structure? Can we see it? (Feel free to send it to me if you can share it.)
Cheers,
-- Jason
On Fri, Jul 20, 2012 at 3:09 PM, Malai wrote:
> Hi Pymol users,
>
> I am using Pymol 1.5.0.0. I tried to cartoon for the complex but Pymol can
> not assign the cartoon for some parts of
Hi Pymol users,
I am using Pymol 1.5.0.0. I tried to cartoon for the complex but Pymol can
not assign the cartoon for some parts of complex. When I use
some commercial visualizer like MOE and Discovery Studio. It works well.
Could you help me what is the problem in the structure or pymol?
Many th
