eply e-mail and destroy all copies of the original
message.
From: Robert Hanson [mailto:hans...@stolaf.edu]
Sent: Saturday, April 02, 2016 1:14 AM
To: jimkress...@kressworks.org
Cc: Thomas Holder ; pymol-users
Subject: Re: [PyMOL] The Wiki appears outdated or in error
In case you are inte
In case you are interested, Jim, Jmol will read (most/some) PyMOL session
files, and Jmol can then create both an idtf for generating a u3d file, and
a small sample TeX file also that can be used to create a PDF containing
it.
I had some interest in u3d back in 2009, when I wrote this exporter. Yo
[mailto:thomas.hol...@schrodinger.com]
Sent: Thursday, March 31, 2016 10:55 AM
To: jimkress...@kressworks.org
Cc: pymol-users
Subject: Re: [PyMOL] The Wiki appears outdated or in error
Hi Jim,
There is a beta version of Incentive PyMOL available for download from
http://pymol.org/download/1811/ (version
@schrodinger.com]
> Sent: Sunday, March 27, 2016 4:10 PM
> To: pymol-users
> Subject: Re: [PyMOL] The Wiki appears outdated or in error
>
> Hi Jared,
>
> Thanks a lot for the patch. Applied to SVN rev 4154.
>
> Cheers,
> Thomas
>
> On 25 Mar 2016, at 20:03,
: Sunday, March 27, 2016 4:10 PM
To: pymol-users
Subject: Re: [PyMOL] The Wiki appears outdated or in error
Hi Jared,
Thanks a lot for the patch. Applied to SVN rev 4154.
Cheers,
Thomas
On 25 Mar 2016, at 20:03, Sampson, Jared M.
wrote:
> Hi Jim -
>
> Here's a patch for Ope
Hi Jared,
Thanks a lot for the patch. Applied to SVN rev 4154.
Cheers,
Thomas
On 25 Mar 2016, at 20:03, Sampson, Jared M. wrote:
> Hi Jim -
>
> Here's a patch for Open Source PyMOL (rev4153) that adds the
> "collada_background_box" setting (default=0). If you're using Open Source
> PyMO
ks.org
Cc: pymol-users
Subject: Re: [PyMOL] The Wiki appears outdated or in error
Hi Jim -
Here's a patch for Open Source PyMOL (rev4153) that adds the
"collada_background_box" setting (default=0). If you're using Open Source
PyMOL and are up to applying it and rebuildin
Hi Jim -
Here's a patch for Open Source PyMOL (rev4153) that adds the
"collada_background_box" setting (default=0). If you're using Open Source
PyMOL and are up to applying it and rebuilding, feel free to use it.
Otherwise, I already sent it to Thomas, so hopefully it will be incorporated
in
ia.edu]
Sent: Thursday, March 24, 2016 2:26 PM
To: jimkress...@kressworks.org
Cc: Sampson, Jared M. ; pymol-users
Subject: Re: [PyMOL] The Wiki appears outdated or in error
Hi Jim -
When I
set geometry_export_mode, 1
in PyMOL, then save myfile.dae, then import into MeshLab, M
Wednesday, March 23, 2016 10:53 PM
To: jimkress...@kressworks.org<mailto:jimkress...@kressworks.org>
Cc: pymol-users
Subject: Re: [PyMOL] The Wiki appears outdated or in error
Hi Jim -
This is something we've been talking about changing. The entire scene as
viewed within PyMOL is
ct the sender by reply e-mail and destroy all copies of the original
message.
From: Sampson, Jared M. [mailto:jms2...@cumc.columbia.edu]
Sent: Wednesday, March 23, 2016 10:53 PM
To: jimkress...@kressworks.org
Cc: pymol-users
Subject: Re: [PyMOL] The Wiki appears outdated or in error
l and destroy all copies of the original
message.
From: Sampson, Jared M. [mailto:jms2...@cumc.columbia.edu]
Sent: Tuesday, March 22, 2016 1:40 PM
To: jimkress...@kressworks.org<mailto:jimkress...@kressworks.org>
Cc: pymol-users
Subject: Re: [PyMOL] The Wiki appears outdated or in error
Hi
il and destroy all copies of the original
message.
From: Sampson, Jared M. [mailto:jms2...@cumc.columbia.edu]
Sent: Tuesday, March 22, 2016 1:40 PM
To: jimkress...@kressworks.org
Cc: pymol-users
Subject: Re: [PyMOL] The Wiki appears outdated or in error
Hi Jim -
The COLLADA exporting co
troy all copies of the original
message.
From: Sampson, Jared M. [mailto:jms2...@cumc.columbia.edu]
Sent: Wednesday, March 16, 2016 2:28 PM
To: jimkress...@kressworks.org<mailto:jimkress...@kressworks.org>
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] The Wiki appears outdated or
day, March 16, 2016 2:28 PM
To: jimkress...@kressworks.org
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] The Wiki appears outdated or in error
Hi James -
If I remember correctly, PyMOL's IDTF output currently only supports triangles
meshes (not cylinders or spheres,
Hi James -
If I remember correctly, PyMOL's IDTF output currently only supports triangles
meshes (not cylinders or spheres, e.g.), so unfortunately you're basically
limited to surface representations for output directly into that format.
As a workaround, you could try saving your scene in COLLA
nesday, March 16, 2016 2:28 PM
To: jimkress...@kressworks.org
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] The Wiki appears outdated or in error
Hi James -
If I remember correctly, PyMOL's IDTF output currently only supports triangles
meshes (not cylinders or spheres
Among the export functions, a particular interest of mine is the as a
idtf file as "precursor" for a 3d pdf mentioned at
http://www.pymolwiki.org/index.php/3d_pdf
where I experience difficulties I want to address here.
While the export via the CLI works fine for creating a *.png pic
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