Re: [PyMOL] Structure align by sequence

2014-07-23 Thread Thomas Holder
Hi Jordan, use the "pepseq" selection operator: select align_1, protein_1 and pepseq YYDFGHSFG select align_2, protein_2 and pepseq YYDFGHSFG align align_1, align_2 Cheers, Thomas Jordan Willis wrote, On 07/23/14 21:58: > Hi, > > I have a really just awful way of doing this and was wonde

[PyMOL] Structure align by sequence

2014-07-23 Thread Jordan Willis
Hi, I have a really just awful way of doing this and was wondering if there is a pymol solution that would make it easier. Here is the problem. Given two protein sequences, align their corresponding amino acids. The position of each of the strings is not known, just the sequence. Ex. Protei