Hi Syeda,
you have a lot of options in PyMOL to do this. For full-atom RMSD fit on
topologically identical molecules (since it's MD, I guess this is the case),
use the "fit" command:
PyMOL> fit mobile, target
Otherwise, use "align" or "super":
PyMOL> align mobile, target, cycles=0
>From a py
Hello I want to know how PyMol does Structural allignment. I am writing a
python script to allign protein structures(from MD simulations) and
eventually calculate RMSD. Please can anyone provide me a source code or a
helping material.Thanx in advance.
Hira Batool
Student of BS-Bioinformatics
