RE: [PyMOL] Series of general questions

2004-04-10 Thread Warren DeLano
> 1) I would like to show certain residues and have no problem > getting the ones I want selected and displayed as sticks or > whatever. The problem is color. When I change the color of > the selection, it changes the color of the associated section > of the ribbon. I would like to leave

Re: [PyMOL] Series of general questions

2004-04-10 Thread Andreas Förster
Tony, Gareth, when I display sidechains only, I want to see the proline nitrogen. After I've loaded all objects, I select all mainchain atoms (except proline nitrogen) and display sidechains like this: select mainchain, n;C,O,N and not pro/n show sticks, object and not mainchain The advantage i

Re: [PyMOL] Series of general questions

2004-04-10 Thread Gareth Stockwell
Tony, I'll answer the easy questions, and leave the tough ones to the real gurus... > 1) I would like to show certain residues and have no problem getting the > ones I want selected and displayed as sticks or whatever. The problem is > color. When I change the color of the selection, it chang

[PyMOL] Series of general questions

2004-04-09 Thread Tony Giannetti
Dear PyMol users, I realize the following may be somewhat basic questions, but after fiddling with the program a while and trying out example scripts from the web, I cannot seem to get things to work properly. The last question is kind of advanced and would have cool effects if someone knows h