Re: [PyMOL] Selecting specific ligands for colouring

2015-01-06 Thread Matthew Baumgartner
Hi, I just wanted to chime in and add to what Folmer said. Your selection syntax was close, but not quite correct, you are missing a slash. Following you example, you would do /2hyy//A/600 where 600 is the residue id of the ligand. But in general, I would recommend using the syntax that Folmer

Re: [PyMOL] Selecting specific ligands for colouring

2015-01-06 Thread Folmer Fredslund
Hi Brenton, It seems 2HYY only has that one (type of) ligand present? so: fetch 2hyy as cartoon show sticks, organic color black, elem c and organic remove not chain a gives me a cartoon representation of the protein, with a stick representation of the ligand. There are 4 copies of the complex i

[PyMOL] Selecting specific ligands for colouring

2015-01-06 Thread Brenton Horne
Hi, I know I must be getting annoying, although I must say this mailing list and its users have been very helpful for me so thank you all. My question this time is how do I select specific ligands? Like I am using PDB ID 2HYY and I'd like to set the imatinib (STI600) ligand as the only visibl