c [mailto:fke...@ulg.ac.be]
> Sent: Wednesday, October 21, 2009 5:51 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] Secondary Structure Matching
>
> Hello,
>
> Is there a way to perform secondary structure matching with
> Pymol. I already tried the align
I normally use this command with that purpose:
align obj1&(ss h)&name ca, obj2&(ss h)&name ca
That is, obj2 is structurally aligned onto obj1 on the basis the CA
trace on the regions where secondary structure matches alfa helix (ss h)
Hugo
Kerff Frédéric wrote:
> Hello,
>
> Is there a way to per
Hello,
Is there a way to perform secondary structure matching with Pymol. I
already tried the align function with different selections without any
success but the 2 proteins obviously share the same fold with low sequence
identity.
I know it can be done in other software like Coot but I'd like to
