Re: [PyMOL] Rigimol/ipymol

2009-07-02 Thread Jesper Lykkegaard Karlsen
Hi Joel, The trick is to have all the atoms through out the morph in every single pdb. Thus, pdb1 needs to have ligands from pdb2 and pdb3 and so forth. Move the non-bound ligands out of the binding site for every pdb. If you run Rigimol now you will see the ligands, in turn, bind to the bindi

[PyMOL] Rigimol/ipymol

2009-07-01 Thread Joel Tyndall
Hi folks, I was wondering if anyone can help. I have made some nice morphs using rigimol/ipymol based on Warren's examples (Thanks Warren). I was wondering if anyone has any scripts to do the following. I have generated a morph with two structures with two different ligands where there is a c