> i) Is there any guarantee that atoms are stored internally in
> the same order that they appear in the PDB file?
set retain_order
sort
However, that's not really necessary:
> ii) If so, is there any way to directly construct a selection
> containing e.g. atoms 1,3,8,10,11... of a given objec
I'm using PyMOL as my main visualisation tool, and have a question
relating to the transfer of data from my application to the viewer.
Inside my programs, I typically have a number of molecule objects, and
on each molecule, have made a number of selections (of atoms, of
residues or of chains). No