Re: [PyMOL] Re: PyMOL-APBS os x

2004-07-16 Thread Michael George Lerner
Hi, That sounds like APBS's psize.py is having trouble with your input data .. you could try going to the "APBS Location" tab and deleting the path to psize.py .. then it'll use my code instead. For some reason, it's reading "1.00103.81" where it expects a floating point number .. it's possible t

Re: [PyMOL] Re: PyMOL-APBS os x

2004-07-16 Thread James R. Graham
On Jul 16, 2004, at 1:41 PM, Michele Fuortes wrote: I compiled APBS successfully. Now when I try the plugin and click on Set Grid I get: i was able to compile it on my macs as well (after installing the fortran compiler). now, i just have to wait for the next version of macpymol in order to

[PyMOL] Re: PyMOL-APBS os x

2004-07-16 Thread Michele Fuortes
Hi, I compiled APBS successfully. Now when I try the plugin and click on Set Grid I get: --- Error: 1 ValueError Exception in Tk callback Function: at 0x81205f0> (type: ) Args: () Traceback (innermost last): File "/Users/delwarl/pymol/products/PyMOLX11Hybrid.app/py23/lib/python2.3/Pmw/Pmw_

Re: [PyMOL] Re: PyMOL-APBS os x

2004-07-15 Thread Christopher Yip
The previous suggestion about downloading g77 and installing it from hpc.sourceforge.net worked for me - at least I didn't get an error when I ran APBS On Jul 15, 2004, at 10:54 PM, Jianghai Zhu wrote: I still can't compile it with scott's method. Do you mind share your binary with us?

Re: [PyMOL] Re: PyMOL-APBS os x

2004-07-15 Thread Jianghai Zhu
I still can't compile it with scott's method. Do you mind share your binary with us? Jianghai == Jianghai Zhu Molecular Biology & Biochemistry Purdue University == On Jul 15, 2004, at 7:47 PM, William Scott wrote: The best way to overcome this is

[PyMOL] Re: PyMOL-APBS os x

2004-07-15 Thread William Scott
The best way to overcome this is to compile it, so that you don't have to depend on someone's dynamic library. Fink doesn't build the g77 dynamic library, which allows you to avoid this problem. If you use g77 3.4.1 (which is what is currently in fink) with gcc 3.3 you will have some linkin