Re: [PyMOL] Pymol-Alignment Module

Hi Ecem - If I understand correctly, you first want to align on one set of residues and calculate their RMSD, then to calculate the RMSD for the remaining residues without moving the structures. This is straightforward using PyMOL's internal command line. ``` # Create two selections called "sel1

[PyMOL] Pymol-Alignment Module

Dear Pymol community, I have a question about alignment module of Pymol. I have two different pdb ids and each have about 100 amino acid long. I would like to align the specific parts of these proteins and see both how the rest of the proteins and also these specific parts superimpose with each ot

Re: [PyMOL] pymol alignment help

Hi Clarisa, Please rephrase your question and describe what your goal is. Please give some details about what you already tried, and at what step you got stuck or need help. "Download an aligment" is not common terminology, so it's likely that nobody on the list understood your question. You m

[PyMOL] pymol alignment help

Hello! could someone help me to download a pymol alignment? and know with which score it makes the alignment. Thanks in advance. Clarisa. -- ___ PyMOL-users mailing list (PyMOL-u

[PyMOL] Pymol alignment

Hello! could someone help me to download a pymol alignment? and know with which score it makes the alignment. Thanks in advance. Clarisa. -- ___ PyMOL-users mailing list (PyMOL-u